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Sarcoptes scabiei miRna regulation

software
posted on 05.08.2022, 02:32 authored by PASI KORHONENPASI KORHONEN

Sarcoptes scabiei miRNA regulation


R-codes for the publication "Evidence that transcriptional alterations in Sarcoptes scabiei are under tight post-transcriptional (microRNA) control".


Description of Files

* runDeMrna.r: differential transcription for mRNA data using the software EdgeR

* runDeMir.r: differential transcription for miRNA data using the software EdgeR

* runDn.r: inferring genes downregulated by miRNAs using correlation analysis (generates heatmap images)

* runUp.r: inferring genes upregulated by miRNAs using correlation analysis (generates heatmap images)

* mrna.cnts: read count data for mRNA samples and replicates

* mir.cnts: read count data for miRNA samples and replicates

* pVals1000.rds: precalculated p-values for each miRNA-gene correlation

* mir.gff: GFF file to locate miRNAs in the genome



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