Fig2-MaHV1 trees.tiff (325.26 kB)

Phylogenetic relationship between macropodid herpesvirus 1 (MaHV1) and other viruses from the Alphaherpesvirinae subfamily.

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posted on 12.09.2016 by PAOLA VAZ, Timothy Mahony, CAROL HARTLEY, Elizabeth V. Fowler, NINO FICORILLI, Sang W. Lee, James Gikerson, GLENN BROWNING, JOANNE DEVLIN
The relationship between macropodid herpesvirus 1 (MaHV1) and other viruses from the Alphaherpesvirinae subfamily. Neighbour-joining distance trees were generated using the translated protein sequences of conserved herpesvirus ORFs: a glycoprotein B, gB (UL27); b DNA polymerase, DPOL (UL30); and c glycoprotein D, gD (US6). Bootstrap values (10,000 replicates) are shown for each branch, with Gallid herpesvirus 2 (GaHV2) as an outgroup. The abbreviations and GenBank accession details are: macropodid herpesvirus 2 (MaHV2) [GenBank:AAD11961, GenBank:AAL13143, gB and gD], macropodid herpesvirus 4 (MaHV4) [GenBank:AGC54689, gB], macacine herpesvirus 1 (HBV) [GenBank:AAA85652, GenBank:NP_851890, GenBank:AAB24129, gB, DPOL and gD], fruit bat herpesvirus 1 (FbHV1) [GenBank:YP_009042089, GenBank:YP_009042092, GenBank:YP_009042126, gB, DPOL and gD], gallid herpesvirus 1 (GaHV1) [GenBank:AEB97319 , GenBank:AEB97322, GenBank:AEB97368, gB, DPOL and gD], gallid herpesvirus 2 (GaHV2) [GenBank:CAA63039, GenBank:YP_001033959, GenBank:AAA64967, gB, DPOL and gD], human herpesvirus 1 (HHV1) [GenBank:NP_044629, GenBank:NP_044632, GenBank:CAA32283, gB, DPOL and gD], human herpesvirus 2 (HHV2) [GenBank:NP_044497, GenBank:NP_044500, GenBank:AAB60553, gB, DPOL and gD], human herpesvirus 3 (HHV3) [GenBank:NP_040154.2, GenBank:NP_040151, gB and DPOL], saimiriine herpesvirus 1 (SaHV1) [GenBank:YP_003933812, GenBank:YP_003933809, GenBank:ADO13836, gB, DPOL and gD], bovine herpesvirus 1 (BoHV1) [GenBank:AAA46013, GenBank:NP_045328, GenBank:CAA80604, gB, DPOL and gD], bovine herpesvirus 2 (BoHV2) [GenBank:P12641.2, GenBank:AAD55134:, gB and DPOL], bovine herpesvirus 5 (BoHV5) [GenBank:YP_003662497, GenBank:YP_003662494, GenBank:AAA67359, gB, DPOL and gD], canine herpesvirus 1 (CHV) [GenBank:AAK51052, GenBank:AAX47050, GenBank:AAB67058, gB, DPOL and gD], felid herpesvirus 1 (FeHV1) [GenBank:AAB28559, GenBank:YP_003331549, GenBank:BAA06442, gB, DPOL and gD], equine herpesvirus 1 (EHV1) [GenBank:Q6DLH8, GenBank:YP_053075, GenBank:AAA46073, gB, DPOL and gD], equine herpesvirus 4 (EHV4) [GenBank:NP_045250, GenBank:NP_045247, GenBank:NP_045289, gB, DPOL and gD], suid herpesvirus 1 (PRV) [GenBank:YP_068330, GenBank:YP_068333, GenBank:AAC36717, gB, DPOL and gD].

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