Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens
datasetposted on 08.04.2018 by KATHRYN HOLT, KELLY WYRES
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii.
2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.