cluster_beds.zip (576.52 kB)
Cluster beds
dataset
posted on 2020-06-16, 01:23 authored by Dominic MaderazoRefer to Fig 1 "Classification" and Table 1
They are in a .bed like format that follows this convention:
Chrom segStart segEnd gcContent conservationLevel
As they are, the files can be used to perform the binary classification with the enrichments set out in the paper. Results from this can then be used to estimate the performance of binary classifiers and identify an optimal combination.
Users wishing to do the de novo motif analysis and ontology association are required to remove the last 2 columns so that the files are suitable for Trawler and GREAT.
These files can also be uploaded on to UCSC after the final 2 columns have been deleted.