Klebsiella genome assemblies used in Wyres et al MGen 2016: Identification of Klebsiella capsule synthesis loci from whole genome data

If you use these assemblies please cite the publication below and acknowledge the relevant database and/or original research articles describing the raw sequence data.

Wyres, K.L., Wick, R.R., Gorrie, C., Jenney, A., Follador, R, Thomson, N.R. and Holt K.E. Identification of Klebsiella capsule synthesis loci from whole genome data. (2016) MGen 2, doi: 10.1099/mgen.0.000102

The assemblies include those available in the Patric online database and from the NCTC3000 genomes project plus assemblies generated by the Holt Lab. Please see the above paper in MGen for a description of the assembly method and citations for the raw sequence reads.

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CC BY 4.0