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Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens
dataset
posted on 2018-04-08, 02:00 authored by KATHRYN HOLT, KELLY WYRES1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii.
2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.
